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  5. Sacu_v1.1_s0174.g024516

Sacu_v1.1_s0174.g024516


Description : not classified & original description: CDS=1-474


Gene families : OG0003208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003208_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0174.g024516

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00157890 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Aop_g28048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06813.t1 Aspi01Gene06813 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69403.t1 Aspi01Gene69403 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69405.t1 Aspi01Gene69405 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.19G057000.1 Ceric.19G057000 not classified & original description: pacid=50575271... 0.02 OrthoFinder output from all 47 species
Ceric.1Z233900.1 Ceric.1Z233900 not classified & original description: pacid=50628265... 0.03 OrthoFinder output from all 47 species
Dcu_g24473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_39268 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_157865g0010 AAc1, ACT1 Actin-1 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species
MA_427792g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_58010g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Tin_g08477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
CC GO:0048046 apoplast IEP HCCA

No InterPro domains available for this sequence

No external refs found!