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  5. Sacu_v1.1_s0173.g024476

Sacu_v1.1_s0173.g024476 (ATCSP3, CSP3)


Aliases : ATCSP3, CSP3

Description : cold-responsive mRNA chaperone *(CSD) & original description: CDS=1-504


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0173.g024476
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Adi_g099317 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene20244.t1 ATCSP2, GRP2,... cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025234 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.05 OrthoFinder output from all 47 species
Gb_18506 ATCSP3, CSP3 RNA chaperone (CSP). mRNA chaperone (CSD) 0.02 OrthoFinder output from all 47 species
Nbi_g02715 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g20696 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.05 OrthoFinder output from all 47 species
Ppi_g06750 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Solyc01g111300.4.1 GRP2B, ATGRP2B,... RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 OrthoFinder output from all 47 species
Solyc10g055250.1.1 ATCSP2, GRP2,... RNA chaperone (CSP). mRNA chaperone (CSD) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 148 164
IPR002059 CSP_DNA-bd 59 127
No external refs found!