1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0168.g024273

Sacu_v1.1_s0168.g024273 (MS1)


Aliases : MS1

Description : transcriptional regulator *(MS1) & original description: CDS=1-2583


Gene families : OG0003400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003400_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0168.g024273
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01011588001 MS1 RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
LOC_Os09g27620.1 MS1, LOC_Os09g27620 MMD1/DUET meiotic recombination regulating protein. PHD... 0.02 OrthoFinder output from all 47 species
LOC_Os11g12650.1 LOC_Os11g12650 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s1844.g028194 MMD1 PHD finger transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sam_g48354 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g008420.1.1 MS1, Solyc04g008420 MMD1/DUET meiotic recombination regulating protein. PHD... 0.03 OrthoFinder output from all 47 species
Zm00001e034314_P001 MS1, Zm00001e034314 MMD1/DUET meiotic recombination regulating protein. PHD... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 801 847
No external refs found!