Sacu_v1.1_s0168.g024260 (CHR01, CHR1, CHA1,...)

Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1

Description : not classified & original description: CDS=245-1573

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0168.g024260

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00063470	CHR01, CHR1,...	Chromatin organisation.DNA methylation.RNA-independent...	0.04	OrthoFinder output from all 47 species
AT5G18620	CHR17	chromatin remodeling factor17	0.03	OrthoFinder output from all 47 species
AT5G66750	CHR01, CHR1,...	chromatin remodeling 1	0.04	OrthoFinder output from all 47 species
Ala_g22712	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g28495	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.08	OrthoFinder output from all 47 species
Als_g01913	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g05226	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g06161	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.07	OrthoFinder output from all 47 species
Aop_g08885	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene45824.t1	CHR5, Aspi01Gene45824	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene50287.t1	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g007848	CHR01, CHR1,...	not classified & original description: CDS=1-2349	0.05	OrthoFinder output from all 47 species
Cba_g06040	CHR5	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g12790	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.02G040400.1	CHR5, Ceric.02G040400	not classified & original description: pacid=50584074...	0.06	OrthoFinder output from all 47 species
Ceric.21G081900.1	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020960.24	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre03.g158550	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
Dac_g05131	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g07364	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.06	OrthoFinder output from all 47 species
Dac_g22364	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g05806	CHR11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g15911	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g42061	CHR5	not classified & original description: none	0.11	OrthoFinder output from all 47 species
Dde_g08436	CHR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01018979001	CHR01, CHR1,...	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Gb_16888	CHR01, CHR1,...	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
LOC_Os01g27040.1	CHR17, LOC_Os01g27040	chromatin remodeling factor (Iswi)	0.02	OrthoFinder output from all 47 species
LOC_Os03g51230.2	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.04	OrthoFinder output from all 47 species
LOC_Os09g27060.1	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.06	OrthoFinder output from all 47 species
Len_g14805	CHR5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g27757	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g17063	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
MA_104034g0010	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.08	OrthoFinder output from all 47 species
MA_42406g0010	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.04	OrthoFinder output from all 47 species
Mp4g12200.1	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.04	OrthoFinder output from all 47 species
Msp_g27750	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g02499	CHR5	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Nbi_g04407	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.11	OrthoFinder output from all 47 species
Ppi_g12699	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g15409	CHR5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17918	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g17278	No alias	chromatin remodeling factor *(DDM1) & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g17473	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo102612	CHR5	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Smo110395	CHR01, CHR1,...	Chromatin organisation.DNA methylation.RNA-independent...	0.02	OrthoFinder output from all 47 species
Solyc01g079690.4.1	ATCHR12, Solyc01g079690	chromatin remodeling factor (Snf2)	0.03	OrthoFinder output from all 47 species
Solyc02g062780.4.1	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.05	OrthoFinder output from all 47 species
Solyc02g085390.4.1	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.05	OrthoFinder output from all 47 species
Solyc06g054560.3.1	CHR11, Solyc06g054560	chromatin remodeling factor (Iswi)	0.06	OrthoFinder output from all 47 species
Spa_g10521	CHR5	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g13795	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g24876	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g45964	CHR11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g08903	CHR01, CHR1,...	chromaTin remodeling factor *(DDM1) & original description: none	0.09	OrthoFinder output from all 47 species
Tin_g11014	CHR01, CHR1,...	chromaTin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g31900	CHR5	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Zm00001e005517_P002	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.04	OrthoFinder output from all 47 species
Zm00001e011541_P001	CHR01, CHR1,...	chromatin remodeling factor (DDM1)	0.05	OrthoFinder output from all 47 species
Zm00001e017643_P001	CHR17, Zm00001e017643	chromatin remodeling factor (Iswi)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	202	315
IPR000330	SNF2_N	12	180
IPR001810	F-box_dom	66	103

External Links

No external refs found!

Sacu_v1.1_s0168.g024260 (CHR01, CHR1, CHA1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation