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  5. Sacu_v1.1_s0168.g024243

Sacu_v1.1_s0168.g024243 (TCP2)


Aliases : TCP2

Description : TCP-type transcription factor & original description: CDS=1-1395


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0168.g024243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00158020 TCP4, MEE35,... RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
Ceric.37G069500.1 TCP2, Ceric.37G069500 TCP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Gb_07891 ATTCP24, TCP24 transcription factor (TCP) 0.01 OrthoFinder output from all 47 species
MA_52440g0010 TCP4, MEE35 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Mp1g19590.1 TCP3 transcription factor (TCP) 0.01 OrthoFinder output from all 47 species
Pir_g25790 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26630 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g053410.4.1 TCP4, MEE35,... transcription factor (TCP) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 106 237
No external refs found!