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  5. Sacu_v1.1_s0158.g023796

Sacu_v1.1_s0158.g023796 (RIN4)


Aliases : RIN4

Description : regulatory factor *(RIN4) guarded by RPM1/RPS2 activities & original description: CDS=232-1047


Gene families : OG0000509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0158.g023796
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Adi_g108150 RIN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g35611 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.02 OrthoFinder output from all 47 species
Ceric.03G042100.1 RIN4, Ceric.03G042100 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.03 OrthoFinder output from all 47 species
Ehy_g10233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g05944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011655_P004 RIN4, Zm00001e011655 RIN4 effector-triggered immunity RPM1-interacting factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008700 TypeIII_avirulence_cleave 117 145
IPR008700 TypeIII_avirulence_cleave 273 306
No external refs found!