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  5. Sacu_v1.1_s0157.g023745

Sacu_v1.1_s0157.g023745


Description : Trihelix-type transcription factor & original description: CDS=675-3440


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0157.g023745
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00147950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
Adi_g047696 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058039 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06719 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08051 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g18159 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22378 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10965 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40404 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g50192 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g57836 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g59070 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g02188 AT-GTL1, GTL1, AT-GTL2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05838.t1 Aspi01Gene05838 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07378.t2 AT-GT2, GT2,... Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene54632.t1 Aspi01Gene54632 Trihelix-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0506.g073955 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0531.g075823 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Cba_g25631 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G031000.1 Ceric.03G031000 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.36G000200.1 Ceric.36G000200 Trihelix-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Dac_g26470 AT-GT2, GT2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03068 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26855 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08505 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13661 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27401 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035465001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.07 OrthoFinder output from all 47 species
LOC_Os02g01380.1 AT-GT2, GT2,... transcription factor (Trihelix) 0.06 OrthoFinder output from all 47 species
LOC_Os03g02240.1 AT-GT2, GT2,... transcription factor (Trihelix) 0.05 OrthoFinder output from all 47 species
LOC_Os04g45750.1 LOC_Os04g45750 transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species
LOC_Os10g37240.4 LOC_Os10g37240 Trihelix transcription factor GT-2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g03878 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19944 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427500g0020 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
MA_10427500g0030 No alias Trihelix transcription factor GTL1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10433499g0020 AT-GT2, GT2 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
MA_331768g0010 No alias Trihelix transcription factor GT-2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_47951g0010 No alias transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species
MA_934266g0010 PTL transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Msp_g06014 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11220 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42672 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59710 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g60651 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006964 No alias Trihelix-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018240 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.1 OrthoFinder output from all 47 species
Spa_g06396 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000092_P003 AT-GTL1, GTL1,... transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Zm00001e004364_P002 Zm00001e004364 transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species
Zm00001e012540_P001 Zm00001e012540 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Zm00001e015271_P001 AT-GT2, GT2,... transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 215 301
IPR044822 Myb_DNA-bind_4 582 672
No external refs found!