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  5. Sacu_v1.1_s0150.g023360

Sacu_v1.1_s0150.g023360 (RPL16)


Aliases : RPL16

Description : not classified & original description: CDS=1-189


Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0150.g023360
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
ATCG00790 RPL16 ribosomal protein L16 0.03 OrthoFinder output from all 47 species
Cre06.g278224 No alias 60S ribosomal protein L16, mitochondrial OS=Prototheca... 0.01 OrthoFinder output from all 47 species
LOC_Os01g57958.1 LOC_Os01g57958 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.03 OrthoFinder output from all 47 species
LOC_Os04g16826.1 LOC_Os04g16826 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.03 OrthoFinder output from all 47 species
LOC_Os10g21344.1 LOC_Os10g21344 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.03 OrthoFinder output from all 47 species
Solyc00g500032.1.1 RPL16, Solyc00g500032 50S ribosomal protein L16, chloroplastic OS=Atropa... 0.03 OrthoFinder output from all 47 species
Solyc00g500077.1.1 RPL16, Solyc00g500077 50S ribosomal protein L16, chloroplastic OS=Atropa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!