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  5. Sacu_v1.1_s0147.g023122

Sacu_v1.1_s0147.g023122


Description : not classified & original description: CDS=1-408


Gene families : OG0001113 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001113_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0147.g023122
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Sam_g14691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025005_P001 Zm00001e025005 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e034971_P002 Zm00001e034971 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004181 metallocarboxypeptidase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR025124 DUF4050 24 89
IPR025124 DUF4050 96 132
No external refs found!