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  5. Sacu_v1.1_s0145.g023022

Sacu_v1.1_s0145.g023022 (ATUBC1, UBC1)


Aliases : ATUBC1, UBC1

Description : not classified & original description: CDS=193-651


Gene families : OG0003855 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003855_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0145.g023022

Target Alias Description ECC score Gene Family Method Actions
Als_g25925 ATUBC1, UBC1 E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007794 ATUBC1, UBC1 not classified & original description: CDS=1-453 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037796 ATUBC1, UBC1 not classified & original description: CDS=102-560 0.04 OrthoFinder output from all 47 species
Cba_g09528 ATUBC1, UBC1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.15G032400.1 ATUBC1, UBC1,... E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.04 OrthoFinder output from all 47 species
Gb_21641 ATUBC1, UBC1 Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum... 0.02 OrthoFinder output from all 47 species
Sam_g08775 No alias E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.02 OrthoFinder output from all 47 species
Spa_g14144 ATUBC2, UBC2 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0035434 copper ion transmembrane transport IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 72 209
No external refs found!