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  5. Sacu_v1.1_s0142.g022787

Sacu_v1.1_s0142.g022787


Description : not classified & original description: CDS=1-1491


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0142.g022787

Target Alias Description ECC score Gene Family Method Actions
Aev_g21001 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23626 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23653 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23868 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g26509 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28650 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28711 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g31647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68719 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g13329 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06009 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g56400.1 LOC_Os03g56400 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Len_g04113 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g04421 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41092 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010805 VAC1, ECB2, ATECB2 not classified & original description: CDS=294-2756 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011566 No alias not classified & original description: CDS=1-2082 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g014007 No alias not classified & original description: CDS=1-1872 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016963 No alias not classified & original description: CDS=1-2211 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026755 CRR22 not classified & original description: CDS=1-2307 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 382 405
IPR002885 Pentatricopeptide_repeat 105 152
IPR002885 Pentatricopeptide_repeat 307 354
IPR002885 Pentatricopeptide_repeat 408 451
IPR002885 Pentatricopeptide_repeat 206 254
No external refs found!