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  5. Sacu_v1.1_s0141.g022775

Sacu_v1.1_s0141.g022775


Description : regulatory protein of RNA homeostasis & original description: CDS=1-1131


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0141.g022775
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Aob_g01806 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aob_g02256 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.02 OrthoFinder output from all 47 species
Ceric.10G007100.1 Ceric.10G007100 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ore_g29816 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo413367 No alias Zinc finger CCCH domain-containing protein 56 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Zm00001e025892_P001 Zm00001e025892 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
CC GO:0031390 Ctf18 RFC-like complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 225 247
IPR000571 Znf_CCCH 287 311
IPR000571 Znf_CCCH 148 172
No external refs found!