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  5. Sacu_v1.1_s0140.g022717

Sacu_v1.1_s0140.g022717


Description : not classified & original description: CDS=201-1574


Gene families : OG0001699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001699_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0140.g022717

Target Alias Description ECC score Gene Family Method Actions
Als_g28045 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g16189 SNM1, ATSNM1 interstrand crosslink repair factor *(SNM) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os01g57440.1 LOC_Os01g57440 DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Lfl_g08761 SNM1, ATSNM1 interstrand crosslink repair factor *(SNM) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 801 845
IPR002885 Pentatricopeptide_repeat 400 444
IPR002885 Pentatricopeptide_repeat 900 946
IPR002885 Pentatricopeptide_repeat 699 745
IPR002885 Pentatricopeptide_repeat 597 644
IPR002885 Pentatricopeptide_repeat 98 146
IPR002885 Pentatricopeptide_repeat 497 544
IPR002885 Pentatricopeptide_repeat 198 245
IPR002885 Pentatricopeptide_repeat 63 92
IPR002885 Pentatricopeptide_repeat 774 800
IPR002885 Pentatricopeptide_repeat 303 330
IPR002885 Pentatricopeptide_repeat 8 29
IPR002885 Pentatricopeptide_repeat 874 899
IPR002885 Pentatricopeptide_repeat 273 297
IPR011084 DRMBL 220 345
No external refs found!