Sacu_v1.1_s0139.g022654 (PSB28)

Aliases : PSB28

Description : protein involved in PS-II assembly *(Psb28) & original description: CDS=1-906

Gene families : OG0005594 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005594_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0139.g022654
Cluster	HCCA: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
AT4G28660	PSB28	photosystem II reaction center PSB28 protein	0.03	OrthoFinder output from all 47 species
Aev_g03543	PSB28	protein involved in PS-II assembly *(Psb28) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene01403.t1	PSB28, Aspi01Gene01403	protein involved in PS-II assembly *(Psb28) & original...	0.03	OrthoFinder output from all 47 species
Gb_39548	PSB28	Psb28 protein involved in PS-II assembly	0.02	OrthoFinder output from all 47 species
LOC_Os01g71190.1	PSB28, LOC_Os01g71190	Psb28 protein involved in PS-II assembly	0.03	OrthoFinder output from all 47 species
Msp_g12017	PSB28	protein involved in PS-II assembly *(Psb28) & original...	0.02	OrthoFinder output from all 47 species
Sam_g09153	No alias	protein involved in PS-II assembly *(Psb28) & original...	0.02	OrthoFinder output from all 47 species
Spa_g21623	PSB28	protein involved in PS-II assembly *(Psb28) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	Interproscan
CC	GO:0009654	photosystem II oxygen evolving complex	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004832	valine-tRNA ligase activity	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0042586	peptide deformylase activity	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005610	PSII_Psb28_class-1	193	298

External Links

No external refs found!