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  5. Sacu_v1.1_s0138.g022562

Sacu_v1.1_s0138.g022562 (LZF1, STH3, DBB3)


Aliases : LZF1, STH3, DBB3

Description : BBX class-IV transcription factor & original description: CDS=1-1215


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0138.g022562
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Adi_g001540 STH not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058823 STO BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g03048 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04775 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19117 No alias BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63908.t1 STH, Aspi01Gene63908 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01876 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09735 STO BBX class-IV transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g37029 No alias BBX class-IV transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Gb_39727 STH transcription factor (BBX-DBB) 0.05 OrthoFinder output from all 47 species
Nbi_g02898 No alias BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19854 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06206 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39847 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27847 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09219 No alias BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23286 STO BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!