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  5. Sacu_v1.1_s0138.g022527

Sacu_v1.1_s0138.g022527


Description : RAB5 canonical effector *(EREX) & original description: CDS=126-2249


Gene families : OG0002176 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0138.g022527
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cba_g25569 No alias RAB5 canonical effector *(EREX) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21503 No alias RAB5 canonical effector *(EREX) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g58076 No alias RAB5 canonical effector *(EREX) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004560 alpha-L-fucosidase activity IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0015928 fucosidase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR001683 PX_dom 92 167
IPR039297 COX7a 46 97
No external refs found!