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  5. Sacu_v1.1_s0138.g022516

Sacu_v1.1_s0138.g022516 (ATBPC2, BPC2, BBR/BPC2)


Aliases : ATBPC2, BPC2, BBR/BPC2

Description : subunit beta of co-translational insertion system Sec61 subcomplex & original description: CDS=1-1392


Gene families : OG0000626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0138.g022516
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AT2G01930 ATBPC1, BPC1, BBR basic pentacysteine1 0.02 OrthoFinder output from all 47 species
Aop_g03756 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g02269 BBR/BPC5, BPC5, ATBPC5 BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03381 ATBPC4, BPC4, BBR BBR/BPC-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g07354 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024162001 ATBPC4, BPC4, BBR RNA biosynthesis.transcriptional activation.BBR/BPC... 0.03 OrthoFinder output from all 47 species
Nbi_g21603 ATBPC1, BPC1, BBR BBR/BPC-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01263 BBR/BPC5, BPC5, ATBPC5 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03032 BBR/BPC5, BPC5, ATBPC5 BBR/BPC-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01680 BPC3, ATBPC3 BBR/BPC-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
InterPro domains Description Start Stop
IPR016482 SecG/Sec61-beta/Sbh 416 455
IPR010409 GAGA-bd_tscrpt_act 1 344
No external refs found!