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  5. Sacu_v1.1_s0137.g022467

Sacu_v1.1_s0137.g022467


Description : EC_4.1 carbon-carbon lyase & original description: CDS=1-2772


Gene families : OG0004402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0137.g022467

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00128310 evm_27.TU.AmTr_v1... Amino acid metabolism.biosynthesis.aspartate... 0.03 OrthoFinder output from all 47 species
GSVIVT01029866001 No alias Diaminopimelate decarboxylase 2, chloroplastic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR022644 De-COase2_N 487 759
IPR022643 De-COase2_C 760 850
No external refs found!