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  5. Sacu_v1.1_s0136.g022409

Sacu_v1.1_s0136.g022409 (APUM2, PUM2)


Aliases : APUM2, PUM2

Description : not classified & original description: CDS=679-3840


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0136.g022409

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.03 OrthoFinder output from all 47 species
AT3G10360 APUM4, PUM4 pumilio 4 0.03 OrthoFinder output from all 47 species
AT3G20250 PUM5, APUM5 pumilio 5 0.04 OrthoFinder output from all 47 species
Adi_g011592 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023994 PUM5, APUM5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s2326.g110592 PUM1, APUM1 not classified & original description: CDS=3742-4032 0.04 OrthoFinder output from all 47 species
Dde_g05952 PUM3, APUM3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016507001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Sam_g10568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc06g005670.4.1 PUM3, APUM3,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc06g076340.3.1 APUM2, PUM2,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0030328 prenylcysteine catabolic process IEP HCCA
BP GO:0030329 prenylcysteine metabolic process IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 356 718
IPR001313 Pumilio_RNA-bd_rpt 987 1016
IPR001313 Pumilio_RNA-bd_rpt 760 793
IPR001313 Pumilio_RNA-bd_rpt 941 974
IPR001313 Pumilio_RNA-bd_rpt 869 903
IPR001313 Pumilio_RNA-bd_rpt 724 758
IPR001313 Pumilio_RNA-bd_rpt 906 936
IPR001313 Pumilio_RNA-bd_rpt 838 863
IPR001313 Pumilio_RNA-bd_rpt 796 829
No external refs found!