Sacu_v1.1_s0129.g021995 (SVP, AGL22)

Aliases : SVP, AGL22

Description : MADS/AGL-type transcription factor & original description: CDS=1-621

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0129.g021995
Cluster	HCCA: Cluster_67

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00267050	AGL6,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Adi_g082624	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s2186.g109823	No alias	not classified & original description: CDS=5-496	0.03	OrthoFinder output from all 47 species
Len_g33017	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08300	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_347547g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Pir_g36418	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000222	AGL33	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	147	194

External Links

No external refs found!