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  5. Sacu_v1.1_s0128.g021912

Sacu_v1.1_s0128.g021912


Description : not classified & original description: CDS=1-2454


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0128.g021912
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Ala_g11948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0093.g043186 No alias not classified & original description: CDS=1-3252 0.03 OrthoFinder output from all 47 species
Cba_g20888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005758 No alias not classified & original description: CDS=1-2499 0.03 OrthoFinder output from all 47 species
Sam_g24370 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25360 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 247 276
IPR002885 Pentatricopeptide_repeat 330 352
IPR002885 Pentatricopeptide_repeat 464 516
IPR002885 Pentatricopeptide_repeat 355 403
IPR002885 Pentatricopeptide_repeat 585 632
IPR002885 Pentatricopeptide_repeat 685 732
IPR002885 Pentatricopeptide_repeat 143 189
No external refs found!