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  5. Sacu_v1.1_s0128.g021871

Sacu_v1.1_s0128.g021871


Description : regulatory factor *(RBP45/47) of mRNA stress granule formation & original description: CDS=95-1561


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0128.g021871

Target Alias Description ECC score Gene Family Method Actions
Adi_g079154 ATRBP47B, RBP47B not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23542 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aob_g28200 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Cba_g05169 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ceric.30G047300.1 ATRBP47B,... regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
GSVIVT01037634001 RBP45B, ATRBP45B Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
GSVIVT01037635001 ATRBP45C Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Lfl_g05318 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Lfl_g33868 ATRBP45C regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
MA_10433660g0010 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Sam_g39348 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Smo232989 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc11g065880.2.1 Solyc11g065880 mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Spa_g07132 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 144 213
IPR000504 RRM_dom 51 117
No external refs found!