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  5. Sacu_v1.1_s0123.g021532

Sacu_v1.1_s0123.g021532


Description : not classified & original description: CDS=243-980


Gene families : OG0001346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001346_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0123.g021532
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Aev_g37438 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18059.t1 Aspi01Gene18059 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68144.t1 Aspi01Gene68144 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.36G024900.1 Ceric.36G024900 not classified & original description: pacid=50568301... 0.03 OrthoFinder output from all 47 species
Dcu_g30231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g35810.1 LOC_Os05g35810 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g42901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g27498 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g05364 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g26319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g41232 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g50340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g13088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021775_P001 Zm00001e021775 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR009606 DEAL/Modifying_wall_lignin1/2 65 162
No external refs found!