Sacu_v1.1_s0118.g021222 (ATCNGC20, CNGC20, CNBT1)

Aliases : ATCNGC20, CNGC20, CNBT1

Description : phytochrome photoreceptor *(PHY) & original description: CDS=1-1056

Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0118.g021222

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00152360	ATCNGC17,...	Solute transport.channels.VIC superfamily.cyclic...	0.02	OrthoFinder output from all 47 species
Lfl_g05634	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Lfl_g40461	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
MA_25248g0010	CNGC5, ATCNGC5	cyclic nucleotide-gated cation channel (CNGC)	0.02	OrthoFinder output from all 47 species
Ppi_g05278	CNGC15, ATCNGC15	cyclic nucleotide-gated cation channel *(CNGC) &...	0.04	OrthoFinder output from all 47 species
Solyc03g007260.3.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
MF	GO:0003972	RNA ligase (ATP) activity	IEP	HCCA
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0008452	RNA ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013767	PAS_fold	74	196
IPR003018	GAF	209	388
IPR013515	Phytochrome_cen-reg	401	574
IPR013654	PAS_2	62	176
IPR013767	PAS_fold	611	675
IPR005821	Ion_trans_dom	79	343
IPR002885	Pentatricopeptide_repeat	325	369
IPR002885	Pentatricopeptide_repeat	123	159
IPR002885	Pentatricopeptide_repeat	426	472
IPR002885	Pentatricopeptide_repeat	24	50
IPR002885	Pentatricopeptide_repeat	198	218
IPR002885	Pentatricopeptide_repeat	97	117
IPR002885	Pentatricopeptide_repeat	226	256
IPR002885	Pentatricopeptide_repeat	401	425
IPR002885	Pentatricopeptide_repeat	500	525

External Links

No external refs found!

Sacu_v1.1_s0118.g021222 (ATCNGC20, CNGC20, CNBT1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation