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  5. Sacu_v1.1_s0116.g021059

Sacu_v1.1_s0116.g021059


Description : component *(eL8) of large ribosomal-subunit (LSU) proteome & original description: CDS=12-767


Gene families : OG0001502 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001502_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0116.g021059
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00218360 evm_27.TU.AmTr_v1... 60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AMTR_s00047p00140240 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT2G47610 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 OrthoFinder output from all 47 species
AT3G62870 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 OrthoFinder output from all 47 species
Adi_g117976 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g38500 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0102.g044550 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.28G063900.1 Ceric.28G063900 component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.22 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre12.g529651 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g30506 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01008585001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01033050001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01036540001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Gb_36761 No alias component RPL7a of LSU proteome component 0.05 OrthoFinder output from all 47 species
Gb_36922 No alias component RPL7a of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os08g23710.1 LOC_Os08g23710 component RPL7a of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os09g32976.1 LOC_Os09g32976 component RPL7a of LSU proteome component 0.05 OrthoFinder output from all 47 species
MA_109678g0010 No alias component RPL7a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp2g23250.1 No alias component RPL7a of LSU proteome component 0.05 OrthoFinder output from all 47 species
Mp8g17650.1 No alias component RPL7a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Msp_g01446 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pp3c26_330V3.1 Pp3c26_330 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 OrthoFinder output from all 47 species
Pp3c9_380V3.1 Pp3c9_380 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 OrthoFinder output from all 47 species
Sam_g06600 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g28791 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g28887 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo270545 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc01g097760.3.1 Solyc01g097760 component RPL7a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g10426 No alias component *(eL8) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e010129_P001 Zm00001e010129 component RPL7a of LSU proteome component 0.05 OrthoFinder output from all 47 species
Zm00001e034633_P002 Zm00001e034633 component RPL7a of LSU proteome component 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008252 nucleotidase activity IEP HCCA
MF GO:0008253 5'-nucleotidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009166 nucleotide catabolic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009264 deoxyribonucleotide catabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 112 200
No external refs found!