Sacu_v1.1_s0115.g020964 (BUM1, SHL, STM, WAM, WAM1, BUM)

Aliases : BUM1, SHL, STM, WAM, WAM1, BUM

Description : KNOX-type transcription factor & original description: CDS=10-2256

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0115.g020964
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00178300	KNAT7, IXR11,...	Homeobox protein HD1 OS=Brassica napus	0.03	OrthoFinder output from all 47 species
AMTR_s00085p00165180	KNAT6, KNAT6L,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Adi_g019966	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g060986	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g085793	BUM1, SHL, STM,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g04111	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g21136	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g15588	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Azfi_s0001.g000431	KNAT7, IXR11	KNOX-type transcription factor & original description:...	0.06	OrthoFinder output from all 47 species
Azfi_s0022.g016023	KNAT6, KNAT6L, KNAT6S	not classified & original description: CDS=247-1020	0.03	OrthoFinder output from all 47 species
Azfi_s0574.g078063	KNAT3	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0637.g080498	KNAT4	KNOX-type transcription factor & original description: CDS=1-810	0.03	OrthoFinder output from all 47 species
Cba_g05224	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g29252	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.20G046300.1	BUM1, SHL, STM,...	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g27227	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g48747	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01004811001	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01009273001	BP, BP1, KNAT1	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01031241001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
LOC_Os01g19694.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os03g47016.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os03g51690.2	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
LOC_Os03g51710.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
LOC_Os05g03884.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Msp_g44272	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17670	KNAT4	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25529	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g18663	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c6_1550V3.1	KNAT4, Pp3c6_1550	KNOTTED1-like homeobox gene 3	0.01	OrthoFinder output from all 47 species
Ppi_g10499	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007633	KNAT7, IXR11	not classified & original description: CDS=1-1266	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022803	No alias	not classified & original description: CDS=20-451	0.06	OrthoFinder output from all 47 species
Sam_g01264	No alias	KNOX-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Sam_g27266	No alias	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g36645	No alias	KNOX-type transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Sam_g40671	No alias	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc02g081120.4.1	BUM1, SHL, STM,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Solyc05g005090.4.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Tin_g12897	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e017489_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Zm00001e027562_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Zm00001e039044_P001	KNAT7, IXR11,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0046168	glycerol-3-phosphate catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
MF	GO:0047952	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0052646	alditol phosphate metabolic process	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	366	405
IPR008422	Homeobox_KN_domain	675	714
IPR005541	KNOX2	498	541

External Links

No external refs found!

Sacu_v1.1_s0115.g020964 (BUM1, SHL, STM, WAM, WAM1, BUM)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation