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  5. Sacu_v1.1_s0109.g020543

Sacu_v1.1_s0109.g020543


Description : plastidial splicing factor *(PDM3) & original description: CDS=1-1947


Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0109.g020543

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene32670.t1 Aspi01Gene32670 plastidial splicing factor *(PDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g32610 No alias plastidial splicing factor *(PDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e019387_P001 Zm00001e019387 Pentatricopeptide repeat-containing protein At5g39980,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0044877 protein-containing complex binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 177 236
IPR002885 Pentatricopeptide_repeat 255 285
IPR002885 Pentatricopeptide_repeat 437 466
IPR002885 Pentatricopeptide_repeat 503 531
IPR002885 Pentatricopeptide_repeat 538 567
IPR002885 Pentatricopeptide_repeat 470 496
IPR002885 Pentatricopeptide_repeat 363 410
IPR002885 Pentatricopeptide_repeat 117 164
IPR002885 Pentatricopeptide_repeat 294 338
No external refs found!