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  5. Sacu_v1.1_s0106.g020267

Sacu_v1.1_s0106.g020267 (ATARFA1B, ARFA1B)


Aliases : ATARFA1B, ARFA1B

Description : ARF-GTPase *(ARF1) & original description: CDS=156-554


Gene families : OG0000301 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0106.g020267
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AT1G70490 ARFA1D, ATARFA1D Ras-related small GTP-binding family protein 0.02 OrthoFinder output from all 47 species
Adi_g024167 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06715 ATARF1, ARF1,... ARF-GTPase *(ARF1) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08438 ARFA1E, ATARFA1E not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g38870 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27561 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40902 ATARFA1F, ARFA1F not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50225 ATARFA1F, ARFA1F not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26837 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g02390.1 ATARFB1B,... ARF-GTPase 0.04 OrthoFinder output from all 47 species
Lfl_g05175 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33726 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_12637g0010 ATARFA1B, ARFA1B ARF-GTPase 0.03 OrthoFinder output from all 47 species
Msp_g20906 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18630 ATARFA1F, ARFA1F not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pp3c10_20740V3.1 ARFA1E,... ADP-ribosylation factor A1E 0.01 OrthoFinder output from all 47 species
Spa_g05142 ATARFA1B, ARFA1B ARF-GTPase *(ARF1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29323 ATARFA1F, ARFA1F not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49718 ATARFA1F, ARFA1F ARF-GTPase *(ARF1) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e036138_P002 ATARFB1B,... ARF-GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0120009 intermembrane lipid transfer IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 5 113
No external refs found!