1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0105.g020193

Sacu_v1.1_s0105.g020193


Description : group-II intron splicing RNA helicase *(ISE2) & original description: CDS=1067-2617


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0105.g020193
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Cba_g15777 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G031400.1 Ceric.27G031400 not classified & original description: pacid=50605575... 0.02 OrthoFinder output from all 47 species
Dac_g12157 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e016261_P001 Zm00001e016261 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e037076_P003 Zm00001e037076 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR012961 Ski2/MTR4_C 1439 1549
IPR011545 DEAD/DEAH_box_helicase_dom 729 870
IPR001650 Helicase_C 292 393
IPR011545 DEAD/DEAH_box_helicase_dom 62 235
No external refs found!