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  5. Sacu_v1.1_s0104.g020057

Sacu_v1.1_s0104.g020057


Description : nucleoporin of nuclear pore complex *(CG1) & original description: CDS=1-1332


Gene families : OG0005874 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005874_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0104.g020057

Target Alias Description ECC score Gene Family Method Actions
Aev_g38916 No alias nucleoporin of nuclear pore complex *(CG1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.17G080700.1 Ceric.17G080700 nucleoporin of nuclear pore complex *(CG1) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g30741 No alias nucleoporin of nuclear pore complex *(CG1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g07703 No alias nucleoporin of nuclear pore complex *(CG1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e013202_P001 Zm00001e013202 CG1 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004126 cytidine deaminase activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0009972 cytidine deamination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013171 Cyd/dCyd_deaminase_Zn-bd 130 260
IPR002125 CMP_dCMP_dom 27 108
No external refs found!