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  5. Ehy_g07122

Ehy_g07122


Description : component *(PRPF3) of U4/U6.U5 tri-snRNP complex & original description: none


Gene families : OG0005854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g07122

Target Alias Description ECC score Gene Family Method Actions
AT1G28060 No alias Pre-mRNA-splicing factor 3 0.06 OrthoFinder output from all 47 species
Ala_g07036 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.05 OrthoFinder output from all 47 species
Dac_g21181 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Dde_g02373 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
LOC_Os09g07500.1 LOC_Os09g07500 protein factor PRPF3 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
MA_10432248g0010 No alias protein factor PRPF3 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Nbi_g06266 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009412 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Sam_g12406 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Solyc06g036580.4.1 Solyc06g036580 protein factor PRPF3 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Spa_g30204 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e014268_P001 Zm00001e014268 protein factor PRPF3 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species
Zm00001e024816_P001 Zm00001e024816 protein factor PRPF3 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007009 plasma membrane organization IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0017121 plasma membrane phospholipid scrambling IEP HCCA
MF GO:0017128 phospholipid scramblase activity IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0034204 lipid translocation IEP HCCA
BP GO:0045332 phospholipid translocation IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097035 regulation of membrane lipid distribution IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:0140303 intramembrane lipid transporter activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013881 Pre-mRNA_splic_Prp3 777 1002
IPR010541 Prp3_C 1027 1151
No external refs found!