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  5. Sacu_v1.1_s0103.g020008

Sacu_v1.1_s0103.g020008


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-681


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0103.g020008
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00165910 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Azfi_s0159.g053943 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-882 0.03 OrthoFinder output from all 47 species
Dac_g35852 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g42690.3 LOC_Os02g42690 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os04g44820.1 RMA3, ATRMA3,... RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Len_g01102 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g00333 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30883 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g010670.1.1 RMA3, ATRMA3,... RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g41039 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22866 No alias E3 ubiquiTin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR027370 Znf-RING_euk 25 59
No external refs found!