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  5. Sacu_v1.1_s0103.g019979

Sacu_v1.1_s0103.g019979


Description : alpha-class expansin & original description: CDS=1-759


Gene families : OG0005965 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005965_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0103.g019979
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Aev_g17360 No alias alpha-class expansin & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g17379 No alias alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49201 No alias alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g10060 No alias alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67734 No alias alpha-class expansin & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g05196 No alias alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g23182 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g10247 No alias alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18772 ATEXPA1, EXP1,... alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16880 No alias alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43361 No alias alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13913 No alias alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g36048 No alias alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g11608 No alias alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20454 No alias alpha-class expansin & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61538 No alias alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g07260 No alias alpha-class expansin & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51230 No alias alpha-class expansin & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e004712_P001 Zm00001e004712 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008198 ferrous iron binding IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 32 109
No external refs found!