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  5. Sacu_v1.1_s0102.g019919

Sacu_v1.1_s0102.g019919


Description : component *(NOT4) of mRNA deadenylation CCR4-NOT complex & original description: CDS=23-3013


Gene families : OG0003273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003273_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0102.g019919

Target Alias Description ECC score Gene Family Method Actions
AT5G60170 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Ala_g09045 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01025102001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
LOC_Os12g01190.2 LOC_Os12g01190 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Lfl_g34846 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Ore_g37215 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Sam_g07950 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Solyc04g009510.4.1 Solyc04g009510 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 133 194
No external refs found!