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  5. Sacu_v1.1_s0102.g019911

Sacu_v1.1_s0102.g019911


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: CDS=1-1158


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0102.g019911
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Aob_g06027 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aop_g36854 BRH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os02g15100.1 ATL2, TL2, LOC_Os02g15100 RING-H2 finger protein ATL40 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Nbi_g14075 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g43120 ATL31, CNI1 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ore_g16147 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Pir_g15924 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g15928 ATL5 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g63952 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022169 No alias not classified & original description: CDS=1-657 0.02 OrthoFinder output from all 47 species
Smo96631 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Tin_g26609 XERICO not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e017959_P001 Zm00001e017959 RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 143 188
No external refs found!