Sacu_v1.1_s0101.g019793 (KNAT4)

Aliases : KNAT4

Description : KNOX-type transcription factor & original description: CDS=1-1188

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0101.g019793

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00178300	KNAT7, IXR11,...	Homeobox protein HD1 OS=Brassica napus	0.02	OrthoFinder output from all 47 species
Adi_g058538	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g15588	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g08926	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06749	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0574.g078063	KNAT3	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g11389	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007715001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
GSVIVT01031241001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
LOC_Os03g47016.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Lfl_g06541	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g11140.1	BUM1, SHL, STM,...	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Msp_g44272	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29053	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c18_18750V3.1	Pp3c18_18750	KNOTTED1-like homeobox gene 6	0.01	OrthoFinder output from all 47 species
Pp3c19_5610V3.1	Pp3c19_5610	No annotation	0.03	OrthoFinder output from all 47 species
Pp3c19_5620V3.1	BP, BP1, KNAT1,...	KNOTTED-like from Arabidopsis thaliana 2	0.01	OrthoFinder output from all 47 species
Pp3c21_10320V3.1	BUM1, SHL, STM,...	KNOTTED-like from Arabidopsis thaliana 2	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026749	KNAT3	not classified & original description: CDS=1-780	0.03	OrthoFinder output from all 47 species
Spa_g47799	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g47800	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g30670	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g45614	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	HCCA
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0007265	Ras protein signal transduction	IEP	HCCA
BP	GO:0007266	Rho protein signal transduction	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008422	Homeobox_KN_domain	340	379
IPR005540	KNOX1	48	87

External Links

No external refs found!

Sacu_v1.1_s0101.g019793 (KNAT4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation