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  5. Sacu_v1.1_s0097.g019426

Sacu_v1.1_s0097.g019426


Description : not classified & original description: CDS=119-1684


Gene families : OG0000785 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000785_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0097.g019426
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00209930 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G77270 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 OrthoFinder output from all 47 species
AT3G07730 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 OrthoFinder output from all 47 species
AT4G01170 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
Ala_g20760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00971.t1 Aspi01Gene00971 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre12.g531350 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01036441001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os04g45610.1 LOC_Os04g45610 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Pir_g59456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR018866 Znf-4CXXC_R1 52 153
No external refs found!