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  5. Sacu_v1.1_s0095.g019260

Sacu_v1.1_s0095.g019260


Description : E3 ubiquitin ligase & original description: CDS=708-1604


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0095.g019260
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Adi_g006383 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008851 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g050586 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074839 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g125698 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06569 No alias E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g23685 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55442.t1 Aspi01Gene55442 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05081 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G062700.1 Ceric.11G062700 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G007100.1 Ceric.16G007100 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z147500.1 Ceric.1Z147500 E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.23G021200.1 Ceric.23G021200 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G041400.1 Ceric.39G041400 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g09799 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_37740 No alias RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os01g49280.1 LOC_Os01g49280 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g28730.1 LOC_Os05g28730 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os11g38800.1 LOC_Os11g38800 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Ore_g16331 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10613 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g34835 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g45666 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08224 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12301 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g079530.4.1 Solyc01g079530 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Spa_g30245 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g40447 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004474 malate synthase activity IEP HCCA
MF GO:0004476 mannose-6-phosphate isomerase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006097 glyoxylate cycle IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0046487 glyoxylate metabolic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
InterPro domains Description Start Stop
IPR022143 DUF3675 142 259
IPR011016 Znf_RING-CH 86 131
No external refs found!