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  5. Sacu_v1.1_s0092.g018947

Sacu_v1.1_s0092.g018947 (ATS9, RPN6)


Aliases : ATS9, RPN6

Description : regulatory component *(RPN6) of 26S proteasome & original description: CDS=1-1545


Gene families : OG0004037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0092.g018947
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT1G29150 ATS9, RPN6 non-ATPase subunit 9 0.03 OrthoFinder output from all 47 species
Aev_g18137 ATS9, RPN6 regulatory component *(RPN6) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
MF GO:0032422 purine-rich negative regulatory element binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR000717 PCI_dom 283 384
IPR040780 Rpn6_C_helix 390 412
IPR040773 Rpn6_N 12 126
No external refs found!