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  5. Sacu_v1.1_s0092.g018888

Sacu_v1.1_s0092.g018888


Description : scaffold nucleoporin of nuclear pore complex *(RAE1) & original description: CDS=110-1237


Gene families : OG0004854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0092.g018888

Target Alias Description ECC score Gene Family Method Actions
Cba_g10923 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species
Ppi_g12839 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.03 OrthoFinder output from all 47 species
Sam_g09907 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 109 140
IPR001680 WD40_repeat 27 53
IPR002885 Pentatricopeptide_repeat 128 175
No external refs found!