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  5. Sacu_v1.1_s0087.g018455

Sacu_v1.1_s0087.g018455 (CCR1, IRX4, ATCCR1)


Aliases : CCR1, IRX4, ATCCR1

Description : not classified & original description: CDS=1-1080


Gene families : OG0000064 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0087.g018455
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00240760 evm_27.TU.AmTr_v1... Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Aob_g19001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17918.t1 DRL1, Aspi01Gene17918 tetraketide alpha-pyrone reductase *(TKPR) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene71938.t1 CCR1, IRX4,... cinnamoyl-CoA reductase *(CCR) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13180 No alias cinnamoyl-CoA reductase *(CCR) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11333 DFR, TT3, M318 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g14225 DFR, TT3, M318 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012389001 No alias Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Lfl_g12152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436663g0010 No alias Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Msp_g26629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35871 CCR2, ATCCR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0218.g026106 BAN not classified & original description: CDS=96-1079 0.04 OrthoFinder output from all 47 species
Solyc01g008530.3.1 Solyc01g008530 Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Spa_g07512 DFR, TT3, M318 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56416 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e037572_P001 Zm00001e037572 Cinnamoyl-CoA reductase 1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 58 279
No external refs found!