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  5. Sacu_v1.1_s0084.g018261

Sacu_v1.1_s0084.g018261 (TIR5, MSG1, NPH4,...)


Aliases : TIR5, MSG1, NPH4, IAA23, IAA25, IAA21, BIP, ARF7

Description : not classified & original description: CDS=484-2670


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0084.g018261

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00200760 ARF4,... RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
AMTR_s00044p00116500 ARF1,... Auxin response factor 7 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AMTR_s00155p00082980 ARF16,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AMTR_s00211p00025860 MP, IAA24, ARF5,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Adi_g054963 ARF16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054964 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g084657 ARF19, IAA22, ARF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107312 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13048 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07961 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08752 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13618 ARF6 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g59651 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0271.g061201 ARF1 not classified & original description: CDS=77-1246 0.03 OrthoFinder output from all 47 species
Ceric.18G034300.1 ARF16, Ceric.18G034300 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g20944 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17078 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07020 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12286 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18587 ARF16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22354 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g27083 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27139 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016266001 ARF16 Auxin response factor 18 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
LOC_Os02g06910.1 ARF6, LOC_Os02g06910 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os04g36054.1 ARF1, LOC_Os04g36054 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g57610.1 ARF8, ATARF8,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os10g33940.1 ARF16, LOC_Os10g33940 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Mp1g07070.1 ARF10 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Msp_g15236 ARF1 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13886 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25925 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g15530 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g04406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28812 No alias ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30394 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40540 No alias ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g016180.3.1 ARF19, IAA22,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc11g069500.2.1 ARF10, Solyc11g069500 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Spa_g29541 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!