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  5. Sacu_v1.1_s0084.g018208

Sacu_v1.1_s0084.g018208


Description : E3 ubiquitin ligase & original description: CDS=391-1191


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0084.g018208

Target Alias Description ECC score Gene Family Method Actions
Adi_g013102 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055014 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g51424 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00271.t1 Aspi01Gene00271 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 108 153
IPR022143 DUF3675 188 247
No external refs found!