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  5. Sacu_v1.1_s0083.g018154

Sacu_v1.1_s0083.g018154 (RPN5B)


Aliases : RPN5B

Description : regulatory component *(RPN5) of 26S proteasome & original description: CDS=1-1554


Gene families : OG0003644 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0083.g018154
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT5G09900 EMB2107, MSA, RPN5A 26S proteasome regulatory subunit, putative (RPN5) 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021348.57 RPN5B Protein degradation.26S proteasome.regulatory... 0.01 OrthoFinder output from all 47 species
Cre14.g632775 RPN5B Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Lfl_g28889 RPN5B regulatory component *(RPN5) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
MA_10435598g0010 EMB2107, MSA, RPN5A regulatory component RPN5 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Mp6g06620.1 RPN5B regulatory component RPN5 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Nbi_g08616 RPN5B regulatory component *(RPN5) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ore_g17093 RPN5B regulatory component *(RPN5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ore_g37416 RPN5B regulatory component *(RPN5) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Pir_g00574 RPN5B regulatory component *(RPN5) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Pnu_g12287 RPN5B regulatory component *(RPN5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
InterPro domains Description Start Stop
IPR000717 PCI_dom 371 474
IPR040896 RPN5_C 480 512
No external refs found!