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  5. Sacu_v1.1_s0078.g017727

Sacu_v1.1_s0078.g017727


Description : regulatory protein *(SUO) of miRNA biogenesis pathway & original description: CDS=1-4605


Gene families : OG0000514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0078.g017727
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT3G48050 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 OrthoFinder output from all 47 species
AT3G48060 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 OrthoFinder output from all 47 species
Aob_g03624 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Cba_g62788 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ceric.16G046100.1 Ceric.16G046100 not classified & original description: pacid=50589203... 0.03 OrthoFinder output from all 47 species
Dac_g39657 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_39143g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_710118g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp4g16160.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g22070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g31632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005145 No alias not classified & original description: CDS=1-3426 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR001025 BAH_dom 45 152
IPR017923 TFIIS_N 351 400
No external refs found!