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  5. Sacu_v1.1_s0077.g017582

Sacu_v1.1_s0077.g017582 (GT-1)


Aliases : GT-1

Description : Trihelix-type transcription factor & original description: CDS=453-1298


Gene families : OG0003320 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003320_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0077.g017582

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00185670 GT-1,... RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
Adi_g055307 GT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cre03.g151550 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_26179 GT-1 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Pnu_g06278 GT-1 Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g06091 GT-1 Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 571 599
IPR002885 Pentatricopeptide_repeat 226 255
IPR002885 Pentatricopeptide_repeat 660 711
IPR002885 Pentatricopeptide_repeat 393 442
IPR002885 Pentatricopeptide_repeat 122 166
IPR002885 Pentatricopeptide_repeat 603 650
IPR002885 Pentatricopeptide_repeat 502 544
IPR002885 Pentatricopeptide_repeat 257 304
IPR002885 Pentatricopeptide_repeat 324 371
IPR044822 Myb_DNA-bind_4 2 49
No external refs found!