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  5. Sacu_v1.1_s0076.g017558

Sacu_v1.1_s0076.g017558


Description : miRNA uridylyltransferase *(URT1) & original description: CDS=1-2430


Gene families : OG0002070 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0076.g017558

Target Alias Description ECC score Gene Family Method Actions
Dde_g00914 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16757 No alias miRNA uridylyltransferase *(HESO1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12587 No alias miRNA uridylyltransferase *(URT1) & original description: none 0.04 OrthoFinder output from all 47 species
Smo439274 No alias Protein HESO1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000120 RNA polymerase I transcription regulator complex IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA

No InterPro domains available for this sequence

No external refs found!