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  5. Sacu_v1.1_s0075.g017438

Sacu_v1.1_s0075.g017438


Description : not classified & original description: CDS=1-1629


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0075.g017438
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Ala_g07952 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03222 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g21763 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30010 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g31479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004367 No alias not classified & original description: CDS=1-738 0.03 OrthoFinder output from all 47 species
Tin_g02887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13334 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 164 210
IPR002885 Pentatricopeptide_repeat 46 92
IPR002885 Pentatricopeptide_repeat 281 328
IPR002885 Pentatricopeptide_repeat 138 159
IPR002885 Pentatricopeptide_repeat 384 406
IPR002885 Pentatricopeptide_repeat 419 446
No external refs found!