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  5. Sacu_v1.1_s0075.g017374

Sacu_v1.1_s0075.g017374 (NOP56)


Aliases : NOP56

Description : scaffold component *(Nop56) of snoRNP rRNA methylation complex & original description: CDS=76-1767


Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0075.g017374

Target Alias Description ECC score Gene Family Method Actions
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.03 OrthoFinder output from all 47 species
Adi_g050304 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Azfi_s0061.g034932 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Cba_g77651 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001073.20 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Cre12.g525200 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Len_g11157 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012974 NOP58/56_N 9 74
IPR002687 Nop_dom 182 414
No external refs found!