Sacu_v1.1_s0073.g017150


Description : not classified & original description: CDS=1-2094


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0073.g017150

Target Alias Description ECC score Gene Family Method Actions
AT2G01390 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G66631 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g015741 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g089268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20063 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene21360.t1 Aspi01Gene21360 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009714 No alias not classified & original description: CDS=1-2130 0.06 OrthoFinder output from all 47 species
Cba_g14176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17130 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G061400.1 Ceric.01G061400 not classified & original description: pacid=50592672... 0.07 OrthoFinder output from all 47 species
Ceric.03G036200.1 Ceric.03G036200 not classified & original description: pacid=50571952... 0.04 OrthoFinder output from all 47 species
Ceric.11G091600.1 Ceric.11G091600 not classified & original description: pacid=50596008... 0.04 OrthoFinder output from all 47 species
Ceric.16G010400.1 Ceric.16G010400 not classified & original description: pacid=50589761... 0.06 OrthoFinder output from all 47 species
Ceric.19G017900.1 Ceric.19G017900 not classified & original description: pacid=50576444... 0.03 OrthoFinder output from all 47 species
Ceric.26G072600.1 EMB2750, Ceric.26G072600 not classified & original description: pacid=50599096... 0.08 OrthoFinder output from all 47 species
Ceric.39G058300.1 Ceric.39G058300 not classified & original description: pacid=50582561... 0.04 OrthoFinder output from all 47 species
Dde_g07946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019029001 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.04 OrthoFinder output from all 47 species
GSVIVT01019040001 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Len_g12482 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g02323 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g24872 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Msp_g06308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g59517 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g10079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10479 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g12526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g065510.1.1 Solyc02g065510 Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Tin_g13511 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g19487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 464 520
IPR002885 Pentatricopeptide_repeat 577 627
IPR002885 Pentatricopeptide_repeat 130 158
IPR002885 Pentatricopeptide_repeat 161 208
IPR002885 Pentatricopeptide_repeat 230 279
No external refs found!